Citing DEploid

If you use dEploid with the flag -ibd, please cite the following paper:

Zhu, J. S., J. A. Hendry, J. Almagro-Garcia, R. D. Pearson, R. Amato, A. Miles, D. J. Weiss, T. C. D. Lucas, M. Nguyen, P. W. Gething, D. Kwiatkowski, G. McVean, and for the Pf3k Project. (2018) The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria. biorxiv, doi: https://doi.org/10.1101/387266.

Bibtex record::

@article {Zhu387266,
author = {Zhu, Sha Joe and Hendry, Jason A. and Almagro-Garcia, Jacob and Pearson, Richard D. and Amato, Roberto and Miles, Alistair and Weiss, Daniel J. and Lucas, Tim C.D. and Nguyen, Michele and Gething, Peter W. and Kwiatkowski, Dominic and McVean, Gil and ,},
title = {The origins and relatedness structure of mixed infections vary with local prevalence of P. falciparum malaria},
year = {2018},
doi = {10.1101/387266},
publisher = {Cold Spring Harbor Laboratory},
URL = {https://www.biorxiv.org/content/early/2018/08/09/387266},
eprint = {https://www.biorxiv.org/content/early/2018/08/09/387266.full.pdf},
journal = {bioRxiv}
}

If you use dEploid in your work, please cite the program:

Zhu, J. S. J. A. Garcia G. McVean. (2017) Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data. Bioinformatics btx530. doi: https://doi.org/10.1093/bioinformatics/btx530.

Bibtex record::

@article {Zhubtx530,
author = {Zhu, Sha Joe and Almagro-Garcia, Jacob and McVean, Gil},
title = {Deconvolution of multiple infections in {{\em Plasmodium falciparum}} from high throughput sequencing data},
year = {2017},
doi = {10.1093/bioinformatics/btx530},
URL = {https://doi.org/10.1093/bioinformatics/btx530},
journal = {Bioinformatics}
}